Wastewater-Based Epidemiology of Enteric Viruses and Surveillance of Acute Gastrointestinal Illness Outbreaks in a Resource-Limited Region (2024)

Troeger C et al., 2018. Estimates of the global, regional, and national morbidity, mortality, and aetiologies of diarrhoea in 195 countries: a systematic analysis for the Global Burden of Disease Study 2016. Lancet Infect Dis 18: 1211–1228.

Gall AM, Mariñas BJ, Lu Y, Shisler JL, 2015. Waterborne viruses: a barrier to safe drinking water. PLoS Pathog 11: e1004867.

Devault DA, Maguet H, Merle S, Péné-Annette A, Lévi Y, 2018. Wastewater-based epidemiology in low Human Development Index states: bias in consumption monitoring of illicit drugs. Environ Sci Pollut Res Int 25: 27819–27838.

Sims N, Kasprzyk-Hordern B, 2020. Future perspectives of wastewater-based epidemiology: monitoring infectious disease spread and resistance to the community level. Environ Int 139: 105689.

Mao K, Zhang K, Du W, Ali W, Feng X, Zhang H, 2020. The potential of wastewater-based epidemiology as surveillance and early warning of infectious disease outbreaks. Curr Opin Environ Sci Health 17: 1–7.

Hellmér M, Paxéus N, Magnius L, Enache L, Arnholm B, Johansson A, Bergström T, Norder H, 2014. Detection of pathogenic viruses in sewage provided early warnings of hepatitis A virus and norovirus outbreaks. Appl Environ Microbiol 80: 6771–6781.

PubMed
Export Citation

Xagoraraki I, O’Brien E, 2020. Wastewater-based epidemiology for early detection of viral outbreaks. O’Bannon DJ, ed. Women in Water Quality. Basingstoke, United Kingdom: Springer Nature, 75–97.

PubMed
Export Citation

Hovi T, Shulman LM, Van der Avoort H, Deshpande J, Roivainen M, De Gourville EM, 2012. Role of environmental poliovirus surveillance in global polio eradication and beyond. Epidemiol Infect 140: 1–13.

World Health Organization (WHO), 2003. Guidelines for Environmental Surveillance of Poliovirus Circulation. Geneva, Switzerland: WHO.

PubMed
Export Citation

10.

La Rosa G, Bonadonna L, Lucentini L, Kenmoe S, Suffredini E, 2020. Coronavirus in water environments: occurrence, persistence and concentration methods: a scoping review. Water Res 179: 115899.

11.

Randazzo W, Truchado P, Cuevas-Ferrando E, Simón P, Allende A, Sánchez G, 2020. SARS-CoV-2 RNA in wastewater anticipated COVID-19 occurrence in a low prevalence area. Water Res 181: 115942.

12.

Haramoto E, Kitajima M, Hata A, Torrey JR, Masago Y, Sano D, Katayama H, 2018. A review on recent progress in the detection methods and prevalence of human enteric viruses in water. Water Res 135: 168–186.

13.

Chacón L, Barrantes K, Santamaría-Ulloa C, Solano M, Reyes L, Taylor L, Valiente C, Symonds EM, Achí R, 2020. A somatic coliphage threshold approach to improve the management of activated sludge wastewater treatment plant effluents in resource-limited regions. Appl Environ Microbiol 86: e00616-20.

PubMed
Export Citation

14.

Coulliette-salmond AD et al., 2019. Haiti poliovirus environmental surveillance. Am J Trop Med Hyg101: 1240–1248.

15.

Troy SB, Ferreyra-Reyes L, Huang C, Mahmud N, Lee Y-J, Canizales-Quintero S, Flaster H, Baez-Saldana R, Garcia-Garcia L, Maldonado Y, 2011. Use of a novel real-time PCR assay to detect oral polio vaccine shedding and reversion in stool and sewage samples after a Mexican national immunization day. J Clin Microbiol 49: 1777–1783.

16.

González MM, Fonseca MC, Rodríguez CA, Giraldo AM, Vila JJ, Castaño JC, Padilla L, Sarmiento L, 2019. Environmental surveillance of polioviruses in Armenia, Colombia before trivalent oral polio vaccine cessation. Viruses 11: 775.

17.

de Oliveira Pereira JS, da Silva LR, de Meireles Nunes A, de Souza Oliveira S, da Costa EV, da Silva EE, 2016. Environmental surveillance of polioviruses in Rio de Janeiro, Brazil, in support to the activities of Global Polio Eradication Initiative. Food Environ Virol 8: 27–33.

18.

World Bank Group, 2020. PIB (US$a precios actuales) - Costa Rica. Available at: https://datos.bancomundial.org/indicador/NY.GDP.MKTP.CD?end=2019&locations=CR&start=1960. Accessed October 2, 2020.

PubMed
Export Citation

19.

Hewitt J, Leonard M, Greening GE, Lewis GD, 2011. Influence of wastewater treatment process and the population size on human virus profiles in wastewater. Water Res 45: 6267–6276.

20.

Eaton A, Clsceri L, Rice E, Greenberg A, eds., 2005. Standard Methods for the Examination of Water and Wastewater, 21st edition. Washington, DC: American Public Health Association.

PubMed
Export Citation

21.

Deshpande JM, Shetty SJ, Siddiqui ZA, 2003. Environmental surveillance system to track wild poliovirus transmission. Appl Environ Microbiol 69: 2919–2927.

22.

Bortman M, 1999. Elaboración de corredores o canales endémicos mediante planillas de cálculo. Pan Am J Public Health 5: 1–8.

PubMed
Export Citation

23.

de Salud M, 2015. Protocolo: Vigilancia de La Enfermedades Transmitidas Por Alimentos y Agua Paea La Detección e Intervención de Brotes, 1st edition. San José, Costa Rica: Ministerio de Salud de Costa Rica.

PubMed
Export Citation

24.

Rodríguez-Morales F, Suárez-Cuartas MR, Ramos-Ávila AC, 2016. Canal endémico de enfermedad respiratoria aguda y enfermedad diarreica aguda en menores de 5 años en una localidad de Bogotá. Rev Salud Publica (Bogota) 18: 263–274.

25.

Hernández M, Arboleda D, Arce S, Benavides A, Tejada PA, Ramírez SV, Cubides Á, 2016. Metodología para la elaboración de canales endémicos y tendencia de la notificación del dengue, Valle del Cauca, Colombia, 2009–2013. Biomedica 36: 98–107.

26.

Ministerio de Salud de Costa Rica, 2020. Vigilancia de la Salud: Enfermedades de Notificación Colectiva. Available at: https://www.ministeriodesalud.go.cr/index.php/vigilancia-de-la-salud/estadisticas-y-bases-de-datos/notificacion-colectiva. Accessed August 18, 2020.

PubMed
Export Citation

27.

Instituto Nacional de Estadística y Censos (INEC), 2015. Anuario Estadístico 2012–2013. Available at: https://www.inec.cr/sites/default/files/documetos-biblioteca-virtual/12._anuario_2012-2013.pdf. Accessed July 6, 2021.

PubMed
Export Citation

28.

Salas Peraza D, Torres Alvarado G, Obando Rodríguez A, Ramírez Espinoza F, 2015. Boletín Estadístico de Enfermedades o Eventos de Notificación Colectiva En Costa Rica de Año 2015. Available at: https://www.ministeriodesalud.go.cr/index.php/vigilancia-de-la-salud/indicadores-de-salud-boletines/boletin-de-morbilidad/3172-registro-colectivo-2015-4/file. Accessed July 6, 2021.

PubMed
Export Citation

29.

Mata L, Simhon A, Padilla R, del Mar Gamboa M, Vargas G, Hernández F, Mohs E, Lizano C, 1983. Diarrhea associated with rotaviruses, enterotoxigenic Escherichia coli, Campylobacter, and other agents in Costa Rican children, 1976–1981. Am J Trop Med Hyg 32: 146–153.

30.

Patel MM, Pitzer V, Alonso W, Vera D, Lopman B, Tate J, Viboud C, Parashar UD, 2013. Global seasonality of rotavirus disease. Pediatr Infect Dis J 130: 1514–1523.

31.

da Silva Poló T, Peiró JR, Mendes LCN, Ludwig LF, de Oliveira-Filho EF, Bucardo F, Huynen P, Melin P, Thiry E, Mauroy A, 2016. Human norovirus infection in Latin America. J Clin Virol 78: 111–119.

32.

Farfán-García AE, Imdad A, Zhang C, Arias-Guerrero MY, Sánchez-álvarez NT, Iqbal J, Hernández-Gamboa AE, Slaughter JC, Gómez-Duarte OG, 2020. Etiology of acute gastroenteritis among children less than 5 years of age in Bucaramanga, Colombia: a case-control study. PLoS Negl Trop Dis 14: 1–20.

33.

Bányai K, Estes MK, Martella V, Parashar UD, 2018. Viral gastroenteritis. Lancet 392: 175–186.

34.

Gaensbauer JT et al., 2019. Identification of enteropathogens by multiplex PCR among rural and urban Guatemalan children with acute diarrhea. Am J Trop Med Hyg 101: 534–540.

35.

Banco Interamericano de Desarrollo, 2019. ¿Cómo está America Latina en Términos de Saneamiento? Available at: https://www.iadb.org/es/mejorandovidas/como-esta-america-latina-en-terminos-de-saneamiento. Accessed August 19, 2020.

PubMed
Export Citation

36.

Instituto Metereológico Nacional, 2013. Boletín Meteorológico. Available at: https://www.imn.ac.cr/boletin-meteorologico. Accessed July 6, 2021.

PubMed
Export Citation

37.

Sarmiento L, Mas P, Goyenechea A, Palomera R, Morier L, Capó V, Quintana I, Santin M, 2001. First epidemic of echovirus 16 meningitis in Cuba. Emerg Infect Dis 7: 887–889.

38.

Arauz-Ruiz P, Sundqvist L, García Z, Taylor L, Visoná K, Norder H, Magnius LO, 2001. Presumed common source outbreaks of hepatitis A in an endemic area confirmed by limited sequencing within the VP1 region. J Med Virol 65: 449–456.

39.

Pang X, Cao M, Zhang M, Lee B, 2011. Increased sensitivity for various rotavirus genotypes in stool specimens by amending three mismatched nucleotides in the forward primer of a real-time RT-PCR assay. J Virol Methods 172: 85–87.

40.

Japhet MO, Adesina OA, Famurewa O, Svensson L, Nordgren J, 2012. Molecular epidemiology of rotavirus and norovirus in Ile-Ife, Nigeria: high prevalence of G12P[8] rotavirus strains and detection of a rare norovirus genotype. J Med Virol 84: 1489–1496.

Wastewater-Based Epidemiology of Enteric Viruses and Surveillance of Acute Gastrointestinal Illness Outbreaks in a Resource-Limited Region (2024)

References